Infection Genomics for One Health: Publications | Carl R. Woese Institute for Genomic Biology

2024

Zhang, G., He, M., Xiao, L., Jiao, Y., Han, J., Li, C., Miller, M. J., & Zhang, L. (2024). Milk fat globule membrane protects Bifidobacterium longum ssp. infantis ATCC 15697 against bile stress by modifying global transcriptional responses. Journal of Dairy Science, 107(1), 91-104. https://doi.org/10.3168/jds.2023-23591

Zath, G. K., Thomas, M. M., Loveday, E. K., Bikos, D. A., Sanche, S., Ke, R., Brooke, C. B., & Chang, C. B. (2024). Influenza A viral burst size from thousands of infected single cells using droplet quantitative PCR (dqPCR). PLoS pathogens, 20(7 July), Article e1012257. https://doi.org/10.1371/journal.ppat.1012257

Yudhanto, S., Reinhart, J. M., de Souza, C. P., Gochenauer, A., Sander, W. E., Hung, C. C., Maddox, C. W., & Varga, C. (in press). Assessing Illinois companion animal veterinarians' antimicrobial prescription practices and the factors that influence their decisions when treating bacterial infections in dogs and cats. Zoonoses and Public Health, 71(8), 911-924. https://doi.org/10.1111/zph.13172

Yeo, S., Schrader, A. W., Lee, J., Asadian, M., & Han, H. S. (2024). Spot-Based Global Registration for Subpixel Stitching of Single-Molecule Resolution Images for Tissue-Scale Spatial Transcriptomics. Analytical Chemistry, 96(17), 6517-6522. https://doi.org/10.1021/acs.analchem.3c05686

Ye, Q., Wang, D., & Wei, N. (2024). Engineering biomaterials for the recovery of rare earth elements. Trends in Biotechnology, 42(5), 575-590. https://doi.org/10.1016/j.tibtech.2023.10.011

Xu, F., Thoma, C. J., Zhao, W., Zhu, Y., Men, Y., & Wackett, L. P. (2024). Dual feedback inhibition of ATP-dependent caffeate activation economizes ATP in caffeate-dependent electron bifurcation. Applied and Environmental Microbiology, 90(9), e00602-24. https://doi.org/10.1128/aem.00602-24

Xie, Z., Kim, C., Miller, M. J., & Jin, Y. S. (2024). Effects of 2′-fucosyllactose on the viability of starter cultures and Bifidobacterium strains of human origin in yogurt during refrigerated storage. Journal of food science, 89(5), 2546-2556. https://doi.org/10.1111/1750-3841.16996

Widener, S., Njuguna, J. N., Clark, L. V., Anzoua, K. G., Bagmet, L., Chebukin, P., Dwiyanti, M. S., Dzyubenko, E., Dzyubenko, N., Ghimire, B. K., Jin, X., Jørgensen, U., Kjeldsen, J. B., Nagano, H., Peng, J., Petersen, K. K., Sabitov, A., Seong, E. S., Yamada, T., ... Lipka, A. E. (2024). Genotype by environment model predictive ability in Miscanthus. GCB Bioenergy, 16(1), Article e13113. https://doi.org/10.1111/gcbb.13113

Weber, L. L., Reiman, D., Roddur, M. S., Qi, Y., El-Kebir, M., & Khan, A. A. (2024). TRIBAL: Tree Inference of B Cell Clonal Lineages. In J. Ma (Ed.), Research in Computational Molecular Biology - 28th Annual International Conference, RECOMB 2024, Proceedings (pp. 364-367). (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 14758 LNCS). Springer. https://doi.org/10.1007/978-1-0716-3989-4_32

Weber, L. L., Reiman, D., Roddur, M. S., Qi, Y., El-Kebir, M., & Khan, A. A. (2024). Isotype-aware inference of B cell clonal lineage trees from single-cell sequencing data. Cell Genomics, 4(9), Article 100637. https://doi.org/10.1016/j.xgen.2024.100637

Warnow, T., Tabatabaee, Y., & Evans, S. N. (2024). Statistically Consistent Estimation of Rooted and Unrooted Level-1 Phylogenetic Networks from SNP Data. In C. Scornavacca, & M. Hernández-Rosales (Eds.), Comparative Genomics - 21st International Conference, RECOMB-CG 2024, Proceedings (pp. 3-23). (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 14616 LNBI). Springer. https://doi.org/10.1007/978-3-031-58072-7_1

Vu, E. D., Chiavini, B. E., Gratton, E. M., Dolezal, A. G., & Bonning, B. C. (2024). Representative honey bee viruses do not replicate in the small hive beetle, Aethina tumida Murray. Journal of Invertebrate Pathology, 207, Article 108207. https://doi.org/10.1016/j.jip.2024.108207

Uprety, S., Ngo, I., Maggos, M., Dangol, B., Sherchan, S. P., Shisler, J. L., Amarasiri, M., Sano, D., & Nguyen, T. H. (2024). Multiple pathogen contamination of water, hands, and fomites in rural Nepal and the effect of WaSH interventions. International Journal of Hygiene and Environmental Health, 257, Article 114341. https://doi.org/10.1016/j.ijheh.2024.114341

Tuggle, C. K., Clarke, J. L., Murdoch, B. M., Lyons, E., Scott, N. M., Beneš, B., Campbell, J. D., Chung, H., Daigle, C. L., Das Choudhury, S., Dekkers, J. C. M., Dórea, J. R. R., Ertl, D. S., Feldman, M., Fragomeni, B. O., Fulton, J. E., Guadagno, C. R., Hagen, D. E., Hess, A. S., ... Schnable, P. S. (2024). Current challenges and future of agricultural genomes to phenomes in the USA. Genome biology, 25(1), Article 8. https://doi.org/10.1186/s13059-023-03155-w

Thomas, A. E., Hill, M. E., Stricker, L., Lavin, M., Givens, D., de Flamingh, A., Witt, K. E., Malhi, R. S., & Kitchen, A. (2024). The Dogs of Tsenacomoco: Ancient DNA Reveals the Presence of Local Dogs at Jamestown Colony in the Early Seventeenth Century. American Antiquity, 89(3), 341-359. https://doi.org/10.1017/aaq.2024.25

Taylor, L. N., & Dolezal, A. G. (2024). The effect of Israeli acute paralysis virus infection on honey bee brood care behavior. Scientific reports, 14(1), Article 991. https://doi.org/10.1038/s41598-023-50585-4

Tan, T. J. C., Verma, A. K., Odle, A., Lei, R., Meyerholz, D. K., Matreyek, K. A., Perlman, S., Wong, L. Y. R., & Wu, N. C. (2024). Evidence of antigenic drift in the fusion machinery core of SARS-CoV-2 spike. Proceedings of the National Academy of Sciences of the United States of America, 121(15), Article e2317222121. https://doi.org/10.1073/pnas.2317222121

Suttenfield, L. C., Rapti, Z., Chandrashekhar, J. H., Steinlein, A. C., Vera, J. C., Kim, T., & Whitaker, R. J. (2024). Phage-mediated resolution of genetic conflict alters the evolutionary trajectory of Pseudomonas aeruginosa lysogens. mSystems, 9(9). https://doi.org/10.1128/msystems.00801-24

Storms, S. M., Shisler, J., Nguyen, T. H., Zuckermann, F. A., & Lowe, J. F. (2024). Lateral flow paired with RT-LAMP: A speedy solution for Influenza A virus detection in swine. Veterinary Microbiology, 296, Article 110174. https://doi.org/10.1016/j.vetmic.2024.110174

Stiller, J., Feng, S., Chowdhury, A. A., Rivas-González, I., Duchêne, D. A., Fang, Q., Deng, Y., Kozlov, A., Stamatakis, A., Claramunt, S., Nguyen, J. M. T., Ho, S. Y. W., Faircloth, B. C., Haag, J., Houde, P., Cracraft, J., Balaban, M., Mai, U., Chen, G., ... Zhang, G. (2024). Complexity of avian evolution revealed by family-level genomes. Nature, 629(8013), 851-860. https://doi.org/10.1038/s41586-024-07323-1

Sodagari, H. R., Agrawal, I., Sohail, M. N., Yudhanto, S., & Varga, C. (2024). Monitoring antimicrobial resistance in Campylobacter isolates of chickens and turkeys at slaughter establishment level across the United States, 2013-2021. Epidemiology and Infection, 152, Article e41. https://doi.org/10.1017/S0950268824000359

Sodagari, H. R., Sohail, M. N., & Varga, C. (2024). Differences in the prevalence and antimicrobial resistance among non-typhoidal Salmonella serovars isolated from retail chicken meat across the United States of America, 2013–2020. Food Control, 165, Article 110701. https://doi.org/10.1016/j.foodcont.2024.110701

Shang, L., Zhang, Y., Chen, B., Zong, R., Yue, Z., Zeng, H., Wei, N., & Wang, D. (2024). MMAdapt: A Knowledge-guided Multi-source Multi-class Domain Adaptive Framework for Early Health Misinformation Detection. In WWW 2024 - Proceedings of the ACM Web Conference (pp. 4653-4663). (WWW 2024 - Proceedings of the ACM Web Conference). Association for Computing Machinery. https://doi.org/10.1145/3589334.3648152

Seo, Y., Zhou, A., Nguyen, T. H., & Wei, N. (2024). Yeast Surface-Displayed Quenchbody as a Novel Whole-Cell Biosensor for One-Step Detection of Influenza A (H1N1) Virus. ACS synthetic biology, 13(9), 2926-2937. https://doi.org/10.1021/acssynbio.4c00317

Schwing, C. D., Holmes, C. J., Muturi, E. J., Dunlap, C., Holmes, J. R., & Cáceres, C. E. (2024). Causes and consequences of microbiome formation in mosquito larvae. Ecological Entomology, 49(6), 857-868. https://doi.org/10.1111/een.13360

Sarol, M. J., Ming, S., Radhakrishna, S., Schneider, J., & Kilicoglu, H. (2024). Assessing citation integrity in biomedical publications: corpus annotation and NLP models. Bioinformatics, 40(7), Article btae420. https://doi.org/10.1093/bioinformatics/btae420

Rowland, R. R. R., Salgado, B., Lowe, J., Sonstegard, T. S., Carlson, D. F., Martins, K., Bostrom, J. R., Storms, S., & Brandariz-Nuñez, A. (2024). Deletion of maternal CD163 PSTII-domain-coding exon 13 protects fetuses from infection with porcine reproductive and respiratory syndrome virus (PRRSV). Veterinary Microbiology, 298, Article 110255. https://doi.org/10.1016/j.vetmic.2024.110255

Roddur, M. S., Snir, S., & El-Kebir, M. (in press). Enforcing Temporal Consistency in Migration History Inference. Journal of Computational Biology. https://doi.org/10.1089/cmb.2023.0352

Rider, D. F., Wolf, A. C. E., Murray, J., De Flamingh, A., Dos Santos, A. L. C., Lanoë, F., Zedeño, M. N., DeGiorgio, M., Lindo, J., & Malhi, R. S. (2024). Genomic analyses correspond with deep persistence of peoples of Blackfoot Confederacy from glacial times. Science Advances, 10(14), Article eadl6595. https://doi.org/10.1126/sciadv.adl6595

Rasmussen, A. L., Gronvall, G. K., Lowen, A. C., Goodrum, F., Alwine, J., Andersen, K. G., Anthony, S. J., Baines, J., Banerjee, A., Broadbent, A. J., Brooke, C. B., Campos, S. K., Caposio, P., Casadevall, A., Chan, G. C., Cliffe, A. R., Collins-McMillen, D., Connell, N., Damania, B., ... Yurochko, A. (2024). Virology—the path forward. Journal of virology, 98(1). https://doi.org/10.1128/jvi.01791-23

Ranum, J. N., Ledwith, M. P., Alnaji, F. G., Diefenbacher, M., Orton, R., Sloan, E., Güereca, M., Feltman, EM., Smollett, K., da Silva Filipe, A., Conley, M., Russell, AB., Brooke, CB., Hutchinson, E., & Mehle, A. (2024). Cryptic proteins translated from deletion-containing viral genomes dramatically expand the influenza virus proteome. Nucleic acids research, 52(6), 3199-3212. Article gkae133. https://doi.org/10.1093/nar/gkae133

Ranoa, D. R. E., Holland, R. L., Alnaji, F. G., Green, K. J., Wang, L., Brooke, C. B., Burke, M. D., Fan, T. M., & Hergenrother, P. J. (2024). Saliva-based molecular testing for SARS-CoV-2. (U.S. Patent No. 11926877).

Qi, Y., & El-Kebir, M. (2024). Consensus Tree Under the Ancestor–Descendant Distance is NP-Hard. Journal of Computational Biology, 31(1), 58-70. https://doi.org/10.1089/cmb.2023.0262

Qi, Y., & El-Kebir, M. (2024). Sapling: Inferring and Summarizing Tumor Phylogenies from Bulk Data Using Backbone Trees. In S. P. Pissis, & W.-K. Sung (Eds.), 24th International Workshop on Algorithms in Bioinformatics, WABI 2024 Article 7 (Leibniz International Proceedings in Informatics, LIPIcs; Vol. 312). Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing. https://doi.org/10.4230/LIPIcs.WABI.2024.7

Pountain, A. W., Jiang, P., Yao, T., Homaee, E., Guan, Y., McDonald, K. J. C., Podkowik, M., Shopsin, B., Torres, V. J., Golding, I., & Yanai, I. (2024). Transcription–replication interactions reveal bacterial genome regulation. Nature, 626(7999), 661-669. https://doi.org/10.1038/s41586-023-06974-w

Park, M., Tabatabaee, Y., Ramavarapu, V., Liu, B., Pailodi, V. K., Ramachandran, R., Korobskiy, D., Ayres, F., Chacko, G., & Warnow, T. (2024). Identifying Well-Connected Communities in Real-World and Synthetic Networks. In H. Cherifi, L. M. Rocha, C. Cherifi, & M. Donduran (Eds.), Complex Networks and Their Applications XII - Proceedings of The 12th International Conference on Complex Networks and their Applications: COMPLEX NETWORKS 2023 (pp. 3-14). (Studies in Computational Intelligence; Vol. 1142 SCI). Springer. https://doi.org/10.1007/978-3-031-53499-7_1

Park, J., & Han, H. S. (2024). Organoborane Se and Te Precursors for Controlled Modulation of Reactivity in Nanomaterial Synthesis. ACS Nano, 18(24), 15487-15498. https://doi.org/10.1021/acsnano.3c13159

Pacheco, J., Bengtsson, F., Killander, J., Franco, F., Lundeheim, N., Varga, C., Båge, R., & Morrell, J. M. (2024). Fiber quality and fertility in male alpacas in the Cusco region of Peru. Frontiers in Veterinary Science, 11, Article 1421593. https://doi.org/10.3389/fvets.2024.1421593

Oh, C., Xun, G., Lane, S. T., Petrov, V. A., Zhao, H., & Nguyen, T. H. (2024). Portable, single nucleotide polymorphism-specific duplex assay for virus surveillance in wastewater. Science of the Total Environment, 912, Article 168701. https://doi.org/10.1016/j.scitotenv.2023.168701

Oh, C., Zheng, G., Samineni, L., Kumar, M., & Nguyen, T. H. (2024). Effective Removal of Enteric Viruses by Moringa oleifera Seed Extract Functionalized Cotton Filter. ACS ES and T Water, 4(8), 3320-3331. https://doi.org/10.1021/acsestwater.4c00194

Njoroge, T. M., Berenbaum, M. R., Stone, C. M., Kim, C.-H., Dunlap, C., & Muturi, E. J. (2024). Culex pipiens and Culex restuans larval interactions shape the bacterial communities in container aquatic habitats. FEMS Microbes, 5, Article xtae002. https://doi.org/10.1093/femsmc/xtae002

Nguyen, T. H. (2024). Introducing the Rising Stars of GeoHealth. GeoHealth, 8(5), Article e2024GH001053. https://doi.org/10.1029/2024GH001053

Nguyen, T. H., Filippelli, G., Anenberg, S. C., Franklin, M., Fu, T. M., Dey, S., Hudson-Edwards, K., Jiang, S., Jutla, A., Liu, Y., Miao, C., Paytan, A., & Vengosh, A. (2024). Thank You to Our GeoHealth 2023 Reviewers. GeoHealth, 8(4), Article e2024GH001063. https://doi.org/10.1029/2024GH001063

Nguyen, T. V. P., Wu, Y., Yao, T., Trinh, J. T., Zeng, L., Chemla, Y. R., & Golding, I. (2024). Coinfecting phages impede each other's entry into the cell. Current Biology, 34(13), 2841-2853.e18. https://doi.org/10.1016/j.cub.2024.05.032

Mysonhimer, A. R., Brown, M. D., Alvarado, D. A., Cornman, E., Esmail, M., Abdiel, T., Gutierrez, K., Vasquez, J., Cannavale, C. N., Miller, M. J., Khan, N. A., & Holscher, H. D. (2024). Honey Added to Yogurt with Bifidobacterium animalis subsp. lactis DN-173 010/CNCM I-2494 Supports Probiotic Enrichment but Does Not Reduce Intestinal Transit Time in Healthy Adults: A Randomized, Controlled, Crossover Trial. Journal of Nutrition, 154(8), 2396-2410. https://doi.org/10.1016/j.tjnut.2024.05.028

Montag, W., Liao, L. H., & Berenbaum, M. R. (2024). Sexually dimorphic responses to monofloral honeys in the small hive beetle, Aethina tumida Murray (Coleoptera: Nitidulidae). Journal of Apicultural Research, 63(4), 613-621. https://doi.org/10.1080/00218839.2022.2147712

McFarland, D., Fredericks, L. P., Hedlund, T., Jones, S., Keesing, F., Mutinda, M., & Allan, BF. (2024). A Suite of Pathogens Detected in Ticks Sampled From Wildlife Hosts in Central Kenya. African Journal of Ecology, 62(3), Article e13317. https://doi.org/10.1111/aje.13317

Makarova, K. S., Zhang, C., Wolf, Y. I., Karamycheva, S., Whitaker, R. J., & Koonin, E. V. (2024). Computational analysis of genes with lethal knockout phenotype and prediction of essential genes in archaea. mBio, 15(2). https://doi.org/10.1128/mbio.03092-23

Liu, T., Reiser, W. K., Tan, T. J. C., Lv, H., Rivera-Cardona, J., Heimburger, K., Wu, N. C., & Brooke, C. B. (2024). Natural variation in neuraminidase activity influences the evolutionary potential of the seasonal H1N1 lineage hemagglutinin. Virus Evolution, 10(1), Article veae046. https://doi.org/10.1093/ve/veae046

Lieberthal, B., Allan, B., De Urioste-Stone, S., Mackay, A., Soliman, A., Wang, S., & Gardner, A. M. (2024). The effects of seasonal human mobility and Aedes aegypti habitat suitability on Zika virus epidemic severity in Colombia. PLoS neglected tropical diseases, 18(11), Article e0012571. https://doi.org/10.1371/journal.pntd.0012571

Liao, L. H., Wu, W. Y., & Berenbaum, M. R. (2024). Variation in Pesticide Toxicity in the Western Honey Bee (Apis mellifera) Associated with Consuming Phytochemically Different Monofloral Honeys. Journal of Chemical Ecology, 50(7-8), 397-408. https://doi.org/10.1007/s10886-024-01495-w

Liaghat, A., Yang, J., Whitaker, R., & Pascual, M. (2024). Punctuated virus-driven succession generates dynamical alternations in CRISPR-mediated microbe-virus coevolution. Journal of the Royal Society Interface, 21(217), Article 20240195. https://doi.org/10.1098/rsif.2024.0195

Leonardi-Cattolica, A., Kayastha, S., Miller, M., Guag, J., Tkachenko, A., Lowe, J., Allender, M., Terio, K., & Wang, L. (2024). Evaluation of Fecal Sample Pooling for Real-Time RT-PCR Testing SARS-CoV-2 in Animals. Viruses, 16(11). https://doi.org/10.3390/v16111651

Leman, A. M., Dariotis, J. K., Markazi, D. M., Kennedy, Z., Tracy, M., Park, Y. R., & Griffith, A. N. (in press). An interdisciplinary framework of youth participatory action research informed by curricula, youth, adults, and researchers. Journal of Research on Adolescence. https://doi.org/10.1111/jora.13007

Lei, Y., Xie, Z., Zhao, A., Colarelli, J. P., Miller, M. J., & Lee, Y. (2024). Layer-by-layer coating of Lacticaseibacillus rhamnosus GG (LGG) using chitosan and zein/tween-80/fucoidan nanoparticles to enhance LGG's survival under adverse conditions. Food Hydrocolloids, 154, Article 110039. https://doi.org/10.1016/j.foodhyd.2024.110039

Lei, R., Liang, W., Ouyang, W. O., Hernandez Garcia, A., Kikuchi, C., Wang, S., McBride, R., Tan, T. J. C., Sun, Y., Chen, C., Graham, C. S., Rodriguez, L. A., Shen, I. R., Choi, D., Bruzzone, R., Paulson, J. C., Nair, S. K., Mok, C. K. P., & Wu, N. C. (2024). Epistasis mediates the evolution of the receptor binding mode in recent human H3N2 hemagglutinin. Nature communications, 15(1), Article 5175. https://doi.org/10.1038/s41467-024-49487-4

Lee, J. Y., Soares, G., Doty, C., Park, J., Hovey, J., Schrader, A., & Han, H. S. (2024). Versatile Prepolymer Platform for Controlled Tailoring of Quantum Dot Surface Properties. ACS Applied Materials and Interfaces, 16(12), 15202-15214. https://doi.org/10.1021/acsami.4c00226

Kumar, A., Schrader, A. W., Aggarwal, B., Boroojeny, A. E., Asadian, M., Lee, J. Y., Song, Y. J., Zhao, S. D., Han, H. S., & Sinha, S. (2024). Intracellular spatial transcriptomic analysis toolkit (InSTAnT). Nature communications, 15(1), Article 7794. https://doi.org/10.1038/s41467-024-49457-w

Krist, C., & Shim, S. Y. (2024). Which ideas, when, and why? An experienced teacher's in-the-moment pedagogical reasoning about facilitating student sense-making discussions. Journal of Research in Science Teaching, 61(2), 255-288. https://doi.org/10.1002/tea.21908

Krist, C. (2024). Striving for Relationality: Teacher Responsiveness to Relational Cues When Eliciting Students’ Science Ideas. Cognition and Instruction, 42(2), 207-242. https://doi.org/10.1080/07370008.2024.2308303

Kosmopoulos, J. C., Batstone-Doyle, R. T., & Heath, K. D. (2024). Co-inoculation with novel nodule-inhabiting bacteria reduces the benefits of legume–rhizobium symbiosis. Canadian journal of microbiology, 70(7), 275-288. https://doi.org/10.1139/cjm-2023-0209

Kim, S., & Oh, S. H. (2024). The Challenges of Engaging African American Communities During a Public Health Crisis: The Role of Government Information, COVID-19 Discourse, and Emotional Content on Social Media. International Journal of Strategic Communication, 18(4), 313-329. https://doi.org/10.1080/1553118X.2024.2342460

Kasperek, M. C., Velasquez Galeas, A., Caetano-Silva, M. E., Xie, Z., Ulanov, A., La Frano, M., Devkota, S., Miller, M. J., & Allen, J. M. (2024). Microbial aromatic amino acid metabolism is modifiable in fermented food matrices to promote bioactivity. Food chemistry, 454, Article 139798. https://doi.org/10.1016/j.foodchem.2024.139798

John, P., Varga, C., Cooke, M., & Majowicz, S. E. (2024). Temporal, spatial and space–time distribution of infections caused by five major enteric pathogens, Ontario, Canada, 2010–2017. Zoonoses and Public Health, 71(2), 178-190. https://doi.org/10.1111/zph.13096

Jankelow, A., Chen, C. L., Cowell, T. W., Espinosa de los Monteros, J., Bian, Z., Kindratenko, V., Koprowski, K., Darsi, S., Han, H. S., Valera, E., & Bashir, R. (in press). Multiplexed electrical detection of whole viruses from plasma in a microfluidic platform. Analyst, 149(4), 1190-1201. https://doi.org/10.1039/d3an01510f

Hussain, A., Hussain, S., Yu, A., Varga, C., De Leo, G. A., & Smith, R. L. (2024). Geographical epidemiology of Hyalomma anatolicum and Rhipicephalus microplus in Pakistan: A systematic review. PloS one, 19(8), Article e0309442. https://doi.org/10.1371/journal.pone.0309442

Hsieh, E. M., & Dolezal, A. G. (2024). Nutrition, pesticide exposure, and virus infection interact to produce context-dependent effects in honey bees (Apis mellifera). Science of the Total Environment, 949, Article 175125. https://doi.org/10.1016/j.scitotenv.2024.175125

Hilgendorf, K., Wang, Y., Miller, M. J., & Jin, Y. S. (2024). Precision fermentation for improving the quality, flavor, safety, and sustainability of foods. Current Opinion in Biotechnology, 86, Article 103084. https://doi.org/10.1016/j.copbio.2024.103084

He, Y., Li, Y., Pan, Y., Shang, J., Sun, W., Wang, M., Fan, H., Sanford, R. A., Wei, N., Peng, S., Xie, D., Zhang, W., Chen, S., Liu, Y., Jiang, Z., Jiang, Y., Hu, Y., Li, S., Hu, N., ... Shi, L. (2024). Intimate microbe-water-mineral interactions mediate alkalization in the pyroxene-rich iron ore mines in Panxi area, Southwest China. Journal of Hazardous Materials, 480, Article 136127. https://doi.org/10.1016/j.jhazmat.2024.136127

Hatuwal, B., Goel, V., Deliberto, T. J., Lowe, J., Emch, M., Webby, R. J., & Wan, X. F. (2024). Spatial patterns of influenza A virus spread across compartments in commercial swine farms in the United States. Emerging Microbes and Infections, 13(1), Article 2400530. https://doi.org/10.1080/22221751.2024.2400530

Gu, X., Qi, Y., & El-Kebir, M. (2024). DERNA Enables Pareto Optimal RNA Design. Journal of Computational Biology, 31(3), 179-196. https://doi.org/10.1089/cmb.2023.0283

Gómez-Gómez, A. L., Martínez-Ayala, A. L., Corea-Ventura, P., Stasiewicz, M. J., de Mejia, E. G., & Dávila-Ortiz, G. (2024). Green synthesis of gold nanoparticles by curcin from Jatropha curcas: Characterization and antibacterial activity. MRS Advances, 9(5), 254-258. https://doi.org/10.1557/s43580-024-00876-3

Golding, I., & Amir, A. (2024). Colloquium: Gene expression in growing cells: A biophysical primer. Reviews of Modern Physics, 96(4), Article 041001. https://doi.org/10.1103/RevModPhys.96.041001

Geng, Y., Nguyen, T. V. P., Homaee, E., & Golding, I. (2024). Using bacterial population dynamics to count phages and their lysogens. Nature communications, 15(1), Article 7814. https://doi.org/10.1038/s41467-024-51913-6

Fisher II, A., Tadei, R., Berenbaum, M., Nieh, J., Siviter, H., Crall, J., Glass, J. R., Muth, F., Liao, L.-H., Traynor, K., DesJardins, N., Nocelli, R., Simon-Delso, N., & Harrison, J. F. (2024). A call for clarity: Embracing the debate on pesticide regulation to protect pollinators. BioScience, 74(7), 420-421. Article biae009. https://doi.org/10.1093/biosci/biae009

Farjo, M., Koelle, K., Martin, M. A., Gibson, L. L., Walden, K. K. O., Rendon, G., Fields, C. J., Alnaji, F. G., Gallagher, N., Luo, C. H., Mostafa, H. H., Manabe, Y. C., Pekosz, A., Smith, R. L., McManus, D. D., & Brooke, C. B. (2024). Within-host evolutionary dynamics and tissue compartmentalization during acute SARS-CoV-2 infection. Journal of virology, 98(1). https://doi.org/10.1128/jvi.01618-23

Elkins, C. M., & Hence, D. A. (2024). Radar Survey of Hail-Producing Storms and Environments during the 2018–19 Severe-Weather Season in the Córdoba Region of Argentina. Journal of Applied Meteorology and Climatology, 63(4), 575-593. https://doi.org/10.1175/JAMC-D-23-0140.1

Dong, M., Holle, M. J., Miller, M. J., Banerjee, P., & Feng, H. (2024). Fates of attached E. coli o157:h7 on intact leaf surfaces revealed leafy green susceptibility. Food Microbiology, 119, Article 104432. https://doi.org/10.1016/j.fm.2023.104432

del-Canto, A., Sanz-Saez, A., Heath, K. D., Grillo, M. A., Heras, J., & Lacuesta, M. (2024). Conventional management has a greater negative impact on Phaseolus vulgaris L. rhizobia diversity and abundance than water scarcity. Frontiers in Plant Science, 15, Article 1408125. https://doi.org/10.3389/fpls.2024.1408125

de Flamingh, A., Gnoske, T. P., Rivera-Colón, A. G., Simeonovski, V. A., Kerbis Peterhans, J. C., Yamaguchi, N., Witt, K. E., Catchen, J., Roca, A. L., & Malhi, R. S. (2024). Genomic analysis supports Cape Lion population connectivity prior to colonial eradication and extinction. Journal of Heredity, 115(2), 155-165. Article esad081. https://doi.org/10.1093/jhered/esad081

de Flamingh, A., Gnoske, T. P., Kerbis Peterhans, J. C., Simeonovski, V. A., Gitahi, N., Mwebi, O., Agwanda, B. R., Catchen, J. M., Roca, A. L., & Malhi, R. S. (2024). Compacted hair in broken teeth reveals dietary prey of historic lions. Current Biology, 34(21), 5104-5111.e4. https://doi.org/10.1016/j.cub.2024.09.029

Cowell, T. W., Jing, W., Noh, H., & Han, H. S. (in press). Drop-by-Drop Addition of Reagents to a Double Emulsion. Small, 20(46), Article 2404121. https://doi.org/10.1002/smll.202404121

Costa, A. C. T. R. B., Bhowmick, S., Lowe, J. F., Lage, A. P., de Oliveira, L. F., & Dorneles, E. M. S. (2024). A spatiotemporal analysis of bovine brucellosis cases in Minas Gerais state, Brazil, from 2011 to 2018. Preventive Veterinary Medicine, 224, Article 106101. https://doi.org/10.1016/j.prevetmed.2023.106101

Clark, G. G., Geisler, D., Coey, E. J., Pollitz, L. J., Zaki, F. R., Huang, C., Boppart, S. A., & Nguyen, T. H. (2024). Influence of phosphate on bacterial release from activated carbon point-of-use filters and on biofilm characteristics. Science of the Total Environment, 914, Article 169932. https://doi.org/10.1016/j.scitotenv.2024.169932

Chen, C., Martins, M., Nooruzzaman, M., Yettapu, D., Diel, D. G., Reinhart, J. M., Urbasic, A., Robinson, H., Varga, C., & Fang, Y. (2024). Spatial and temporal clustering of anti-SARSCoV-2 antibodies in Illinois household cats, 2021–2023. PloS one, 19(5), 1-18. Article e0299388. https://doi.org/10.1371/journal.pone.0299388

Chen, L., Chen, A., Zhang, X. D., Robles, M. T. S., Han, H. S., Xiao, Y., Xiao, G., Pipas, J. M., & Weitz, D. A. (2024). Targeted whole-genome recovery of single viral species in a complex environmental sample. Proceedings of the National Academy of Sciences of the United States of America, 121(31), Article e2404727121. https://doi.org/10.1073/pnas.2404727121

Chakraborty, S., Sander, W., Allan, B. F., & Andrade, F. C. D. (2024). Sociodemographic factors associated with Kyasanur forest disease in India - a retrospective study. IJID Regions, 10, 219-227. https://doi.org/10.1016/j.ijregi.2024.02.002

Canby, M. E., Evans, S. N., Ringe, D., & Warnow, T. (2024). Addressing Polymorphism in Linguistic Phylogenetics. Transactions of the Philological Society, 122(2), 191-222. https://doi.org/10.1111/1467-968X.12289

Bush, D. S., Calla, B., & Berenbaum, M. R. (2024). An Aspergillus flavus strain from bee bread of the Western honey bee (Apis mellifera) displays adaptations to distinctive features of the hive environment. Ecology and Evolution, 14(2), Article e10918. https://doi.org/10.1002/ece3.10918

Blanco, A., Coronado, R. A., Arun, N., Ma, K., Dar, R. D., & Kieffer, C. (2024). Monocyte to macrophage differentiation and changes in cellular redox homeostasis promote cell type-specific HIV latency reactivation. Proceedings of the National Academy of Sciences of the United States of America, 121(19), Article e2313823121. https://doi.org/10.1073/pnas.2313823121

Bindhu, S., Nattam, A., Xu, C., Vithala, T., Grant, T., Dariotis, J. K., Liu, H., & Wu, D. T. Y. (2024). Roles of Health Literacy in Relation to Social Determinants of Health and Recommendations for Informatics-Based Interventions: Systematic Review. Online Journal of Public Health Informatics, 16, Article e50898. https://doi.org/10.2196/50898

Bianco, C. M., Caballero-Rothar, N. N., Ma, X., Farley, K. R., & Vanderpool, C. K. (2024). Transcriptional and post-transcriptional mechanisms modulate cyclopropane fatty acid synthase through small RNAs in Escherichia coli. Journal of bacteriology, 206(8). https://doi.org/10.1128/jb.00049-24

Berenbaum, M. R. (2024). Sticking to the Story. American Entomologist, 70(1), 12-15. https://doi.org/10.1093/ae/tmae013

Berenbaum, M. R. (2024). A Burning Attraction. American Entomologist, 70(2), 14-17. https://doi.org/10.1093/ae/tmae037

Berenbaum, M. R., & Thorp, H. H. (2024). EDITORIAL Publishing survey research. Proceedings of the National Academy of Sciences of the United States of America, 121(18), Article e2406826121. https://doi.org/10.1073/pnas.2406826121

Bawden, T., Dolezal, A. G., & Cook, C. N. (2024). Indoor tent management for extending honey bee research season: benefits and caveats. Journal of Insect Science, 24(3), Article 10. https://doi.org/10.1093/jisesa/iead113

Basu, A., Adams, A. N. D., Degnan, P. H., & Vanderpool, C. K. (2024). Determinants of raffinose family oligosaccharide use in Bacteroides species. Journal of bacteriology, 206(10), e0023524. Article e00235-24. https://doi.org/10.1128/jb.00235-24

Alvarado, D. A., Ibarra-Sánchez, L. A., Mysonhimer, A. R., Khan, T. A., Cao, R., Miller, M. J., & Holscher, H. D. (2024). Honey Varietals Differentially Impact Bifidobacterium animalis ssp. lactis Survivability in Yogurt through Simulated In Vitro Digestion. Journal of Nutrition, 154(3), 866-874. https://doi.org/10.1016/j.tjnut.2024.01.010

Akob, D. M., Oates, A. E., Girguis, P. R., Badgley, B. D., Cooper, V. S., Poretsky, R. S., Tierney, B. T., Litchman, E., Whitaker, R. J., Whiteson, K. L., & Metcalf, C. J. E. (2024). Perspectives on the future of ecology, evolution, and biodiversity from the Council on Microbial Sciences of the American Society for Microbiology. mSphere, Article e00307-24. Advance online publication. https://doi.org/10.1128/msphere.00307-24

Agrawal, I., & Varga, C. (2024). Assessing and comparing disease prevention knowledge, attitudes, and practices among veterinarians in Illinois, United States of America. Preventive Veterinary Medicine, 228, Article 106223. https://doi.org/10.1016/j.prevetmed.2024.106223

Agrawal, I., Sharma, B., Singh, A. P., & Varga, C. (2024). Geospatial Analysis of Lumpy Skin Disease Outbreaks among Cattle in Uttar Pradesh, India, 2021–2022. Pathogens, 13(8), Article 611. https://doi.org/10.3390/pathogens13080611

Agrawal, I., Sharma, B., & Varga, C. (2024). Space-Time Clustering and Climatic Risk Factors for Lumpy Skin Disease of Cattle in Uttar Pradesh, India, 2022. Transboundary and Emerging Diseases, 2024, Article 1343156. https://doi.org/10.1155/2024/1343156

2023

Sodagari, H. R., Agrawal, I., Yudhanto, S., & Varga, C. (2023). Longitudinal analysis of differences and similarities in antimicrobial resistance among commensal Escherichia coli isolated from market swine and sows at slaughter in the United States of America, 2013–2019. International Journal of Food Microbiology, 407, Article 110388. https://doi.org/10.1016/j.ijfoodmicro.2023.110388

Shen, C., Liu, B., Williams, K. P., & Warnow, T. (2023). EMMA: a new method for computing multiple sequence alignments given a constraint subset alignment. Algorithms for Molecular Biology, 18(1). https://doi.org/10.1186/s13015-023-00247-x

Bush, D. S., Demkovich, M., Aldunate, M., Siegel, J., & Berenbaum, M. R. (2023). Kaolin as a management alternative for insecticide-resistant navel orangeworm (Lepidoptera: Pyralidae). Journal of economic entomology, 116(6), 2095-2103. Article toad194. https://doi.org/10.1093/jee/toad194

Rogers-Lavanne, M. P., Bader, A. C., de Flamingh, A., Saboowala, S., Smythe, C., Atchison, B., Moulton, N., Wilson, A., Wildman, D. E., Boraas, A., Uddin, M., Worl, R., & Malhi, R. S. (2023). Association between gene methylation and experiences of historical trauma in Alaska Native peoples. International Journal for Equity in Health, 22(1), Article 182. https://doi.org/10.1186/s12939-023-01967-7

Krist, C., & Kubsch, M. (2023). Bias, bias everywhere: A response to Li et al. and Zhai and Nehm. Journal of Research in Science Teaching, 60(10), 2395-2399. https://doi.org/10.1002/tea.21913

Palma-Salgado, S., Ku, K. M., Juvik, J. A., Nguyen, T. H., & Feng, H. (2023). Corrigendum to “Artificial phylloplanes resembling physicochemical characteristics of selected fresh produce and their potential use in bacterial attachment/removal studies” [Food Control 149 (2023) 109730] (Food Control (2023) 149, (S0956713523001305), (10.1016/j.foodcont.2023.109730)). Food Control, 154, Article 109998. https://doi.org/10.1016/j.foodcont.2023.109998

Karlikow, M., Amalfitano, E., Yang, X., Doucet, J., Chapman, A., Mousavi, P. S., Homme, P., Sutyrina, P., Chan, W., Lemak, S., Yakunin, A. F., Dolezal, A. G., Kelley, S., Foster, L. J., Harpur, B. A., & Pardee, K. (2023). CRISPR-induced DNA reorganization for multiplexed nucleic acid detection. Nature communications, 14(1), Article 1505. https://doi.org/10.1038/s41467-023-36874-6

Wu, W. Y., Liao, L. H., Lin, C. H., Johnson, R. M., & Berenbaum, M. R. (2023). Effects of pesticide-adjuvant combinations used in almond orchards on olfactory responses to social signals in honey bees (Apis mellifera). Scientific reports, 13(1), Article 15577. https://doi.org/10.1038/s41598-023-41818-7

Tan, T. J. C., Mou, Z., Lei, R., Ouyang, W. O., Yuan, M., Song, G., Andrabi, R., Wilson, I. A., Kieffer, C., Dai, X., Matreyek, K. A., & Wu, N. C. (2023). High-throughput identification of prefusion-stabilizing mutations in SARS-CoV-2 spike. Nature communications, 14(1), Article 2003. https://doi.org/10.1038/s41467-023-37786-1

Uelmen, J. A., Lamcyzk, B., Irwin, P., Bartlett, D., Stone, C., Mackay, A., Arsenault-Benoit, A., Ryan, S. J., Mutebi, J. P., Hamer, G. L., Fritz, M., & Smith, R. L. (2023). Human biting mosquitoes and implications for West Nile virus transmission. Parasites and Vectors, 16(1), Article 2. https://doi.org/10.1186/s13071-022-05603-1

Uelmen, J. A., Kopsco, H., Mori, J., Brown, W. M., & Smith, R. L. (2023). Modeling community COVID-19 transmission risk associated with U.S. universities. Scientific reports, 13(1), Article 1428. https://doi.org/10.1038/s41598-023-28212-z

Wroblewski, T. H., Witt, K. E., Lee, S., Malhi, R. S., Peede, D., Huerta-Sánchez, E., Villanea, F. A., & Claw, K. G. (2023). Pharmacogenetic variation in Neanderthals and Denisovans and implications for human health and response to medications. Genome biology and evolution, 15(12), Article evad222. https://doi.org/10.1093/gbe/evad222

Liu, B., & Warnow, T. (2023). Weighted ASTRID: fast and accurate species trees from weighted internode distances. Algorithms for Molecular Biology, 18(1), Article 6. https://doi.org/10.1186/s13015-023-00230-6

Lei, R., Kim, W., Lv, H., Mou, Z., Scherm, M. J., Schmitz, A. J., Turner, J. S., Tan, T. J. C., Wang, Y., Ouyang, W. O., Liang, W., Rivera-Cardona, J., Teo, C., Graham, C. S., Brooke, C. B., Presti, R. M., Mok, C. K. P., Krammer, F., Dai, X., ... Wu, N. C. (2023). Leveraging vaccination-induced protective antibodies to define conserved epitopes on influenza N2 neuraminidase. Immunity, 56(11), 2621-2634.e6. https://doi.org/10.1016/j.immuni.2023.10.005

Huang, C., Ginn, T. R., Clark, G. G., Zaki, F. R., Won, J., Boppart, S. A., & Nguyen, T. H. (2023). Phosphate-Based Corrosion Inhibition in Drinking Water Systems and Effects on Disinfectant Decay and Biofilm Growth. Environmental Engineering Science, 40(11), 634-644. https://doi.org/10.1089/ees.2023.0065

Tabatabaee, Y., Roch, S., & Warnow, T. (2023). QR-STAR: A Polynomial-Time Statistically Consistent Method for Rooting Species Trees Under the Coalescent. Journal of Computational Biology, 30(11), 1146-1181. https://doi.org/10.1089/cmb.2023.0185

Mao, Y., Zeineldin, M., Usmani, M., Jutla, A., Shisler, J. L., Whitaker, R. J., & Nguyen, T. H. (2023). Local and Environmental Reservoirs of Salmonella enterica After Hurricane Florence Flooding. GeoHealth, 7(11), Article e2023GH000877. https://doi.org/10.1029/2023GH000877

Resendiz-Moctezuma, C., Fonville, A. P. L., Harsh, B. N., Stasiewicz, M. J., & Miller, M. J. (2023). Use of Doehlert Matrix as a Tool for High-Throughput Screening of Organic Acids and Essential Oils on Miniaturized Pork Loins, Followed by Lab-Scale Validation That Confirmed Tested Compounds Do Not Show Synergistic Effects against Salmonella Typhimurium. Foods, 12(21), Article 4034. https://doi.org/10.3390/foods12214034

Lei, R., Hernandez Garcia, A., Tan, T. J. C., Teo, Q. W., Wang, Y., Zhang, X., Luo, S., Nair, S. K., Peng, J., & Wu, N. C. (2023). Erratum: Mutational fitness landscape of human influenza H3N2 neuraminidase (Cell Reports (2023) 42(1), (S2211124722018526), (10.1016/j.celrep.2022.111951)). Cell Reports, 42(10), Article 113356. https://doi.org/10.1016/j.celrep.2023.113356

Yuan, M., Feng, Z., Lv, H., So, N., Shen, I. R., Tan, T. J. C., Teo, Q. W., Ouyang, W. O., Talmage, L., Wilson, I. A., & Wu, N. C. (2023). Widespread impact of immunoglobulin V-gene allelic polymorphisms on antibody reactivity. Cell Reports, 42(10), Article 113194. https://doi.org/10.1016/j.celrep.2023.113194

Fisher, A., Tadei, R., Berenbaum, M., Nieh, J., Siviter, H., Crall, J., Glass, J. R., Muth, F., Liao, L-H., Traynor, K., Desjardins, N., Nocelli, R., Simon-Delso, N., & Harrison, J. F. (2023). Breaking the cycle: Reforming pesticide regulation to protect pollinators. BioScience, Article biad088. Advance online publication. https://doi.org/10.1093/biosci/biad088

Weber, L. L., Zhang, C., Ochoa, I., & El-Kebir, M. (2023). Phertilizer: Growing a clonal tree from ultra-low coverage single-cell DNA sequencing of tumors. PLoS computational biology, 19(10), Article e1011544. https://doi.org/10.1371/journal.pcbi.1011544

Park, G. L., Sander, W. E., Martenies, S. E., Rosencranz, H., Rice, L. A., Jayasingh-Ramkumar, J., Michaels, S., & Aldridge, B. (2023). Beyond the Imodium, a One Health Discussion on Diarrhea and the Impact of Climate Change. Medical Science Educator, 33(5), 1049-1053. https://doi.org/10.1007/s40670-023-01865-1

Ghorbani, A., Ngunjiri, J. M., Rendon, G., Brooke, C. B., Kenney, S. P., & Lee, C-W. (2023). Diversity and Complexity of Internally Deleted Viral Genomes in Influenza A Virus Subpopulations with Enhanced Interferon-Inducing Phenotypes. Viruses, 15(10), Article 2107. https://doi.org/10.3390/v15102107

Oh, C., Zhou, A., O'Brien, K., Schmidt, A. R., Geltz, J., Shisler, J. L., Schmidt, A. R., Keefer, L., Brown, W. M., & Nguyen, T. H. (2023). Improved performance of nucleic acid-based assays for genetically diverse norovirus surveillance. Applied and environmental microbiology, 89(10). https://doi.org/10.1128/aem.00331-23

Ramezanifard, R., Golubeva, Y. A., Palmer, A. D., & Slauch, J. M. (2023). TamAB is regulated by PhoPQ and functions in outer membrane homeostasis during Salmonella pathogenesis. Journal of bacteriology, 205(10). https://doi.org/10.1128/jb.00183-23

Capel, S. L. R., Allan, B. F., Favela, A., Clem, C. S., Ooi, S. K., Virrueta Herrera, S., Wilson, L. J., & Strickland, L. R. (2023). Education in the Anthropocene: assessing planetary health science standards in the USA. Proceedings of the Royal Society B: Biological Sciences, 290(2007), Article 20230975. https://doi.org/10.1098/rspb.2023.0975

Miller, R. C., Lee, J., Kim, Y. J., Han, H. S., & Kong, H. (2023). In-Drop Thermal Cycling of Microcrystal Assembly for Senescence Control with Minimal Variation in Efficacy. Advanced Functional Materials, 33(37), Article 2302232. https://doi.org/10.1002/adfm.202302232

Shrestha, R. D., Agunos, A., Gow, S. P., & Varga, C. (2023). Assessing antimicrobial resistance in Campylobacter jejuni and Campylobacter coli and its association with antimicrobial use in Canadian turkey flocks. Epidemiology and Infection, 151, Article e152. https://doi.org/10.1017/S0950268823001462

Ruhland, E. L., Johnson, L., Moore, J., Pelly, C., Bess, S., & Dariotis, J. K. (2023). Positionality, intersectionality, power dynamics in community participatory research to define public safety in Black communities. Journal of Community Psychology, 51(7), 2845-2860. https://doi.org/10.1002/jcop.23046

Parr, E. D., Dyer, E. B., Machaka, N., & Krist, C. (2023). Understanding Joint Exploration: the Epistemic Positioning Underlying Collaborative Activity in a Secondary Mathematics Classroom. Canadian Journal of Science, Mathematics and Technology Education, 23(3), 479-496. https://doi.org/10.1007/s42330-023-00295-w

Usmani, M., Uprety, S., Bonham, N., Jamal, Y., Mao, Y., Sano, D., Shisler, J., Unnikrishnan, A., Nguyen, T. H., & Jutla, A. (2023). Assessment of pathogens in flood waters in coastal rural regions: Case study after Hurricane Michael and Florence. PloS one, 18(8 August), Article e0273757. https://doi.org/10.1371/journal.pone.0273757

Collins, A. J., & Whitaker, R. J. (2023). CRISPR Comparison Toolkit: Rapid Identification, Visualization, and Analysis of CRISPR Array Diversity. CRISPR Journal, 6(4), 386-400. https://doi.org/10.1089/crispr.2022.0080

Rappazzo, C. G., Fernandez-Quintero, M. L., Mayer, A., Wu, N. C., Greiff, V., & Guthmiller, J. J. (2023). Defining and studying B cell receptor and TCR interactions. Journal of Immunology, 211(3), 311-322. https://doi.org/10.4049/jimmunol.2300136

Gu, X., Qi, Y., & El-Kebir, M. (2023). Balancing Minimum Free Energy and Codon Adaptation Index for Pareto Optimal RNA Design. In D. Belazzougui, & A. Ouangraoua (Eds.), 23rd International Workshop on Algorithms in Bioinformatics, WABI 2023 Article 21 (Leibniz International Proceedings in Informatics, LIPIcs; Vol. 273). Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing. https://doi.org/10.4230/LIPIcs.WABI.2023.21

Bader, A. C., Carbaugh, A. E., Davis, J. L., Krupa, K., & Malhi, R. S. (2023). Biological samples taken from Native American Ancestors are human remains under NAGPRA. American Journal of Biological Anthropology, 181(4), 527-534. https://doi.org/10.1002/ajpa.24726

Schablitsky, J. M., Witt, K. E., Madrigal, J. R., Ellegaard, M. R., Malhi, R. S., & Schroeder, H. (2023). Corrigendum to “Ancient DNA analysis of a nineteenth century tobacco pipe from a Maryland slave quarter” [J. Archaeol. Sci. 105 (2019) 11–18, (S0305440318305661), (10.1016/j.jas.2019.02.006)]. Journal of Archaeological Science, 156, Article 105801. https://doi.org/10.1016/j.jas.2023.105801

Terrill Sondag, E. E., Stewart Merrill, T. E., Drnevich, J., Holmes, J. R., Fischer, E. K., Cáceres, C. E., & Strickland, L. R. (2023). Differential gene expression in response to fungal pathogen exposure in the aquatic invertebrate, Daphnia dentifera. Ecology and Evolution, 13(8), Article e10354. https://doi.org/10.1002/ece3.10354

Trujillo, J., Schwing, C. D., Muturi, E., & Cáceres, C. E. (2023). Heterocypris incongruens maintains an egg bank in stormwater habitats and influences the development of larval mosquito, Culex restuans. Ecology and Evolution, 13(8), Article e10445. https://doi.org/10.1002/ece3.10445

Roddur, M. S., Snir, S., & El-Kebir, M. (2023). Inferring Temporally Consistent Migration Histories. In D. Belazzougui, & A. Ouangraoua (Eds.), 23rd International Workshop on Algorithms in Bioinformatics, WABI 2023 Article 9 (Leibniz International Proceedings in Informatics, LIPIcs; Vol. 273). Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing. https://doi.org/10.4230/LIPIcs.WABI.2023.9

Ragunathan, P. T., Lim, E. N. K., Ma, X., Massé, E., & Vanderpool, C. K. (2023). Mechanisms of Regulation of Cryptic Prophage-Encoded Gene Products in Escherichia coli. Journal of bacteriology, 205(8). https://doi.org/10.1128/jb.00129-23

Kim, J., Atkinson, C., Miller, M. J., Kim, K. H., & Jina, Y. S. (2023). Microbiome Engineering Using Probiotic Yeast: Saccharomyces boulardii and the Secreted Human Lysozyme Lead to Changes in the Gut Microbiome and Metabolome of Mice. Microbiology Spectrum, 11(4). https://doi.org/10.1128/spectrum.00780-23

Stroet, M., Caron, B., Engler, M. S., van der Woning, J., Kauffmann, A., van Dijk, M., El-Kebir, M., Visscher, K. M., Holownia, J., Macfarlane, C., Bennion, B. J., Gelpi-Dominguez, S., Lightstone, F. C., van der Storm, T., Geerke, D. P., Mark, A. E., & Klau, G. W. (2023). OFraMP: a fragment-based tool to facilitate the parametrization of large molecules. Journal of Computer-Aided Molecular Design, 37(8), 357-371. https://doi.org/10.1007/s10822-023-00511-7

Berenbaum, M. R. (2023). “Debugging” insect-related conspiracy theories. Annals of the Entomological Society of America, Article saad018. Advance online publication. https://doi.org/10.1093/aesa/saad018

Lopez, L. K., Cortez, M. H., DeBlieux, T. S., Menel, I. A., O'Brien, B., Cáceres, C. E., Hall, S. R., & Duffy, M. A. (2023). A healthy but depleted herd: Predators decrease prey disease and density. Ecology, 104(7), Article e4063. https://doi.org/10.1002/ecy.4063

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Rosas, G. (2023). Unsettling: The El Paso Massacre, Resurgent White Nationalism, and the US-Mexico Border. Johns Hopkins University Press. https://doi.org/10.56021/9781421446172

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Yudhanto, S., & Varga, C. (2023). Knowledge and Attitudes of Small Animal Veterinarians on Antimicrobial Use Practices Impacting the Selection of Antimicrobial Resistance in Dogs and Cats in Illinois, United States: A Spatial Epidemiological Approach. Antibiotics, 12(3), Article 542. https://doi.org/10.3390/antibiotics12030542

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Abdulla, S. Z., Kim, K., Azam, M. S., Golubeva, Y. A., Cakar, F., Slauch, J. M., & Vanderpool, C. K. (2023). Small RNAs Activate Salmonella Pathogenicity Island 1 by Modulating mRNA Stability through the hilD mRNA 39 Untranslated Region. Journal of bacteriology, 205(1). https://doi.org/10.1128/jb.00333-22

Park, M., Ivanovic, S., Chu, G., Shen, C., & Warnow, T. (2023). UPP2: Fast and Accurate Alignment of Datasets with Fragmentary Sequences. Bioinformatics, 39(1), Article btad007. https://doi.org/10.1093/bioinformatics/btad007

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Berenbaum, M. R. (2023). Box Steps. American Entomologist, 69(2), 14-17. https://doi.org/10.1093/ae/tmad034

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Berenbaum, M. R. (2023). Editorial Expression of Concern. Proceedings of the National Academy of Sciences of the United States of America, 120(43), Article e2316399120. https://doi.org/10.1073/pnas.2316399120

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Cortez, A. D., Lippert, D., Davis, J. L., Nicholas, G., Malhi, R. S., Weyrich, L. S., Claw, K. G., Bader, A. C., & Colwell, C. (in press). Extracting the practices of paleogenomics: A study of ancient DNA labs and research in relation to Native Americans and Indigenous peoples. American Journal of Biological Anthropology. https://doi.org/10.1002/ajpa.24714

Chakraborty, S., Steckler, T. L., Gronemeyer, P., Mateus-Pinilla, N., & Smith, R. L. (2023). Farmers’ Knowledge and Practices About Ticks and Tickborne Diseases in Illinois. Journal of Agromedicine, 28(4), 756-768. https://doi.org/10.1080/1059924X.2023.2199003

Kim, H. W., Kim, N. K., Phillips, A. P. R., Parker, D. A., Liu, P., Whitaker, R. J., Rao, C. V., & Mackie, R. I. (2023). Genomic insight and physiological characterization of thermoacidophilic Alicyclobacillus isolated from Yellowstone National Park. Frontiers in Microbiology, 14, Article 1232587. https://doi.org/10.3389/fmicb.2023.1232587

Park, M., & Warnow, T. (2023). HMMerge: An ensemble method for multiple sequence alignment. Bioinformatics Advances, 3(1), Article vbad052. https://doi.org/10.1093/bioadv/vbad052

Berenbaum, M. R. (2023). Pesky Problems in the Sky. American Entomologist, 69(3), 12-14. https://doi.org/10.1093/ae/tmad051

Berdychevsky, L., Cavanaugh, D., & Dariotis, J. K. (2023). Psychological, Socio-Demographic, and Logistical Factors Associated With Changes in Sex Life After Over a Year Into the COVID-19 Pandemic. International Journal of Sexual Health, 35(2), 263-283. https://doi.org/10.1080/19317611.2023.2193568

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Farrell, A., Phan, T., Brooke, C. B., Koelle, K., & Ke, R. (2023). Semi-infectious particles contribute substantially to influenza virus within-host dynamics when infection is dominated by spatial structure. Virus Evolution, 9(1), Article vead020. https://doi.org/10.1093/ve/vead020

Tabatabaee, Y., Roch, S., & Warnow, T. (2023). Statistically Consistent Rooting of Species Trees Under the Multispecies Coalescent Model. In H. Tang (Ed.), Research in Computational Molecular Biology - 27th Annual International Conference, RECOMB 2023, Proceedings (pp. 41-57). (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 13976 LNBI). Springer. https://doi.org/10.1007/978-3-031-29119-7_3

Krist, C., Machaka, N., Voss, D., Mathayas, N., Kelly, S., & Shim, S. Y. (2023). Teacher Noticing for Supporting Students’ Epistemic Agency in Science Sensemaking Discussions. Journal of Science Teacher Education, 34(8), 799-819. https://doi.org/10.1080/1046560X.2022.2155355

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Cáceres, C. E., & Stewart Merrill, T. E. (2023). The role of varying resources on Daphnia dentifera immune responses. Fundamental and Applied Limnology, 196(3-4), 217-228. https://doi.org/10.1127/fal/2022/1458

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2022

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Dean, C. A. E., Katz, A. D., Wu, W. Y., & Berenbaum, M. R. (2022). Degree of Dietary Specialization on Furanocoumarin-Containing Hostplants in a Newly Invasive Web Building Caterpillar. Journal of Chemical Ecology, 48(11-12), 850-866. https://doi.org/10.1007/s10886-022-01389-9

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Che, S., Wang, C., Varga, C., Barbut, S., & Susta, L. (2022). Prevalence of breast muscle myopathies (spaghetti meat, woody breast, white striping) and associated risk factors in broiler chickens from Ontario Canada. PloS one, 17(4 April), [e0267019]. https://doi.org/10.1371/journal.pone.0267019

Edwards, J. D., Yang, W. H., & Yannarell, A. C. (2022). Soil microbial communities are not altered by garlic mustard in recently invaded central Illinois forests. Ecosphere, 13(4), [e3967]. https://doi.org/10.1002/ecs2.3967

Severson, A. L., Byrd, B. F., Mallott, E. K., Owings, A. C., DeGiorgio, M., de Flamingh, A., Nijmeh, C., Arellano, M. V., Leventhal, A., Rosenberg, N. A., & Malhi, R. S. (2022). Ancient and modern genomics of the Ohlone Indigenous population of California. Proceedings of the National Academy of Sciences, 119(13), e2111533119. [e2111533119]. https://doi.org/10.1073/pnas.2111533119

Ibarra-Sánchez, L. A., Miller, M. J., & Holle, M. J. (2022). Recent Advances in Listeria Mitigation for Queso Fresco. ACS Food Science and Technology, 2(3), 425-434. https://doi.org/10.1021/acsfoodscitech.1c00343

Jing, W., & Han, H. S. (2022). Inertial Self-Assembly Dynamics of Interacting Droplet Ensembles in Microfluidic Flows. Analytical Chemistry, 94(9), 3978-3986. https://doi.org/10.1021/acs.analchem.1c05116

Julian Lantry, F., Epsi, N. J., Pollett, S. D., Simons, M. P., Lindholm, D. A., Colombo, R. E., Fries, A. C., Maves, R. C., Ganesan, A., Utz, G. C., Lalani, T., Smith, A. G., Mody, R. M., Colombo, C. J., Chi, S. W., Madar, C., Huprikar, N., Larson, D. T., Bazan, S., ... Peel, S. (2022). Anatomical Site, Viral Ribonucleic Acid Abundance, and Time of Sampling Correlate with Molecular Detection of Severe Acute Respiratory Syndrome Coronavirus 2 during Infection. Open Forum Infectious Diseases, 9(3), [ofab623]. https://doi.org/10.1093/ofid/ofab623

Bacon, E. A., Kopsco, H., Gronemeyer, P., Mateus-Pinilla, N., & Smith, R. L. (2022). Effects of Climate on the Variation in Abundance of Three Tick Species in Illinois. Journal of medical entomology, 59(2), 700-709. https://doi.org/10.1093/jme/tjab189

Clark, G. G., Pan, W., Giammar, D. E., & Nguyen, T. H. (2022). Influence of point-of-use filters and stagnation on water quality at a preschool and under laboratory conditions. Water Research, 211, [118034]. https://doi.org/10.1016/j.watres.2021.118034

Hatcher, K. M., Smith, R. L., Li, Z., Flaws, J. A., Davies, C. R., & Mahoney, M. M. (2022). Preliminary findings reveal that phthalate exposure is associated with both subjective and objective measures of sleep in a small population of midlife women. Maturitas, 157, 62-65. https://doi.org/10.1016/j.maturitas.2021.11.004

Sass, D., Li, B., Clifton, M., Harbison, J., Xamplas, C., & Smith, R. (2022). THE IMPACT OF ADULTICIDE ON CULEX ABUNDANCE AND INFECTION RATE IN NORTH SHORE OF COOK COUNTY, ILLINOIS. Journal of the American Mosquito Control Association, 38(1), 46-58. https://doi.org/10.2987/21-7036

Deng, H., Konopka, C. J., Prabhu, S., Sarkar, S., Medina, N. G., Fayyaz, M., Arogundade, O. H., Vidana Gamage, H. E., Shahoei, S. H., Nall, D., Youn, Y., Dobrucka, I. T., Audu, C. O., Joshi, A., Melvin, W. J., Gallagher, K. A., Selvin, P. R., Nelson, E. R., Dobrucki, L. W., ... Smith, A. M. (2022). Dextran-Mimetic Quantum Dots for Multimodal Macrophage Imaging In Vivo, Ex Vivo, and In Situ. ACS Nano, 16(2), 1999-2012. https://doi.org/10.1021/acsnano.1c07010

Shen, C., Zaharias, P., & Warnow, T. (2022). MAGUS1eHMMs: improved multiple sequence alignment accuracy for fragmentary sequences. Bioinformatics, 38(4), 918-924. https://doi.org/10.1093/bioinformatics/btab788

Berenbaum, M. R. (2022). Erratum: Cell engineering with microfluidic squeezing preserves functionality of primary immune cells in vivo (Proc. Natl. Acad. Sci. U.S.A. (2018) 115 (E10907-E10914) DOI: 10.1073/pnas.1809671115). Proceedings of the National Academy of Sciences of the United States of America, 119(6), [e2200126119]. https://doi.org/10.1073/pnas.2200126119

Zhang, G., St. Clair, A. L., Dolezal, A. G., Toth, A. L., & O'Neal, M. E. (2022). Can Native Plants Mitigate Climate-related Forage Dearth for Honey Bees (Hymenoptera: Apidae)? Journal of economic entomology, 115(1), 1-9. https://doi.org/10.1093/jee/toab202

Blaxter, M., Archibald, J. M., Childers, A. K., Coddington, J. A., Crandall, K. A., Di Palma, F., Durbin, R., Edwards, S. V., Graves, J. A. M., Hackett, K. J., Hall, N., Jarvis, E. D., Johnson, R. N., Karlsson, E. K., Kress, W. J., Kuraku, S., Lawniczak, M. K. N., Lindblad-Toh, K., Lopez, J. V., ... Lewin, H. A. (2022). Why sequence all eukaryotes? Proceedings of the National Academy of Sciences of the United States of America, 119(4), [e2115636118]. https://doi.org/10.1073/pnas.2115636118

Ma, L., Smith, A. M., & Tu, C. (2022). Compact and homogeneous quantum dots and methods of making the same. (U.S. Patent No. 11226336).

Dolezal, A. G. (2022). Carryover insecticide exposure reduces bee reproduction across years. Proceedings of the National Academy of Sciences of the United States of America, 119(1), [e2120128118]. https://doi.org/10.1073/pnas.2120128118

Haynes, E., Stanford, K., Gramhofer, M., Vivirito, K., Durante, K., Wright, A., Varga, C., & Allender, M. C. (2022). EPIDEMIOLOGY OF OPHIDIOMYCOSIS IN LAKE ERIE WATERSNAKES (NERODIA SIPEDON INSULARUM). Journal of wildlife diseases, 58(1), 100-113. https://doi.org/10.7589/JWD-D-21-00111

El-Kebir, M., Morris, Q., Oesper, L., & Sahinalp, S. C. (2022). Emerging Topics in Cancer Evolution. Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing, 27, 397-401.

Liu, X., Ibarra-Sánchez, L. A., Miller, M. J., & Lee, Y. (2022). Fabrication of zein-modified starch nanoparticle complexes via microfluidic chip and encapsulation of nisin. Current Research in Food Science, 5, 1110-1117. https://doi.org/10.1016/j.crfs.2022.07.005

Kim, H. W., Kim, N. K., Phillips, A. P. R., Parker, D. A., Liu, P., Whitaker, R. J., Rao, C. V., & Mackie, R. I. (2022). Genome Sequence of a Thermoacidophilic Methanotroph Belonging to the Verrucomicrobiota Phylum from Geothermal Hot Springs in Yellowstone National Park: A Metagenomic Assembly and Reconstruction. Microorganisms, 10(1), [142]. https://doi.org/10.3390/microorganisms10010142

Taylor, A. J., Cardenas-Torres, E., Miller, M. J., Zhao, S. D., & Engeseth, N. J. (2022). Microbes associated with spontaneous cacao fermentations - A systematic review and meta-analysis. Current Research in Food Science, 5, 1452-1464. https://doi.org/10.1016/j.crfs.2022.08.008

Zaharias, P., Grosshauser, M., & Warnow, T. (2022). Re-evaluating Deep Neural Networks for Phylogeny Estimation: The Issue of Taxon Sampling. Journal of Computational Biology, 29(1), 74-89. https://doi.org/10.1089/cmb.2021.0383

Murray, C. E., Varga, C., Ouckama, R., & Guerin, M. T. (2022). Temporal Study of Salmonella enterica Serovars Isolated from Fluff Samples from Ontario Poultry Hatcheries between 2009 and 2018. Pathogens, 11(1), [9]. https://doi.org/10.3390/pathogens11010009

Cakar, F., Golubeva, Y. A., Vanderpool, C. K., & Slauch, J. M. (2022). The Small RNA MicC Downregulates hilD Translation to Control the Salmonella Pathogenicity Island 1 Type III Secretion System in Salmonella enterica Serovar Typhimurium. Journal of bacteriology, 204(1), [e00378-21]. https://doi.org/10.1128/JB.00378-21

Berenbaum, M. R. (2022). A Hard Pill to Swallow. American Entomologist, 68(4), 14-17. https://doi.org/10.1093/ae/tmac063

Zhang, C., Taluja, S. M., Hallett, E. N., & Whitaker, R. J. (2022). A Rapid Targeted Gene Inactivation Approach in Sulfolobus islandicus. In Methods in Molecular Biology (pp. 145-162). (Methods in Molecular Biology; Vol. 2522). Humana Press Inc.. https://doi.org/10.1007/978-1-0716-2445-6_9

Cass, R. P., Hodgson, E. W., O'Neal, M. E., Toth, A. L., & Dolezal, A. G. (2022). Attitudes about Honey Bees and Pollinator-Friendly Practices: A Survey of Iowan Beekeepers, Farmers, and Landowners. Journal of Integrated Pest Management, 13(1), [30]. https://doi.org/10.1093/jipm/pmac027

Kevrekidis, G. A., Rapti, Z., Drossinos, Y., Kevrekidis, P. G., Barmann, M. A., Chen, Q. Y., & Cuevas-Maraver, J. (2022). Backcasting COVID-19: A physics-informed estimate for early case incidence. Royal Society Open Science, 9(12), [220329]. https://doi.org/10.1098/rsos.220329

Berenbaum, M. R. (2022). Bowl Games. American Entomologist, 68(1), 12-15. https://doi.org/10.1093/ae/tmac006

Epstein, B., Burghardt, L. T., Heath, K. D., Grillo, M. A., Kostanecki, A., Hämälä, T., Young, N. D., & Tiffin, P. (Accepted/In press). Combining GWAS and population genomic analyses to characterize coevolution in a legume-rhizobia symbiosis. Molecular ecology. https://doi.org/10.1111/mec.16602

Zhang, C., Sashittal, P., & El-Kebir, M. (2022). CORSID Enables de novo Identification of Transcription Regulatory Sequences and Genes in Coronaviruses. In I. Pe’er (Ed.), Research in Computational Molecular Biology - 26th Annual International Conference, RECOMB 2022, Proceedings (pp. 360-362). (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 13278 LNBI). Springer. https://doi.org/10.1007/978-3-031-04749-7_28

Kowalski, R., Miller, M. J., Jawde, D., Xie, Z., & Gonzalez De Mejia, E. (2022). Effect of Fermentation on Phenolic Composition and Antioxidant Capacity of Blackcurrant Juice using Lactobacillus with Different ß-Glucosidase Activities. In M. H. Tunick, & E. G. de Meji´a (Eds.), ACS Symposium Series (pp. 91-113). (ACS Symposium Series; Vol. 1406). American Chemical Society. https://doi.org/10.1021/bk-2022-1406.ch007

Blair, B. W., & Lowe, J. F. (2022). Exploración descriptiva de los movimientos de animales dentro de la red de mercadeo de cerdas de desecho de los Estados Unidos. Journal of Swine Health and Production, 30(2), 72-78. https://doi.org/10.54846/jshap/1245

Yarlagadda, K., Zachwieja, A. J., de Flamingh, A., Phungviwatnikul, T., Rivera-Colón, A. G., Roseman, C., Shackelford, L., Swanson, K. S., & Malhi, R. S. (2022). Geographically diverse canid sampling provides novel insights into pre-industrial microbiomes. Proceedings of the Royal Society B: Biological Sciences, 289(1974), [20220052]. https://doi.org/10.1098/rspb.2022.0052

Applegate, C. C., Deng, H., Kleszynski, B. L., Cross, T. W. L., Konopka, C. J., Dobrucki, L. W., Nelson, E. R., Wallig, M. A., Smith, A. M., & Swanson, K. S. (2022). Impact of administration route on nanocarrier biodistribution in a murine colitis model. Journal of Experimental Nanoscience, 17(1), 599-616. https://doi.org/10.1080/17458080.2022.2134563

Jackson-Gordo, R., Dariotis, J. K., Fisher, B. S., & Dickman-Burnet, V. (2022). Implementing Sexual Violence Primary Prevention Programs: A Case Study of Implementer Perspectives. Journal of Youth Development, 17(4), 126-144. https://doi.org/10.5195/jyd.2022.1272

Dewerff, S. J., Zhang, C., Schneider, J., & Whitaker, R. J. (2022). Intraspecific antagonism through viral toxin encoded by chronic Sulfolobus spindle-shaped virus. Philosophical Transactions of the Royal Society B: Biological Sciences, 377(1842), [20200476]. https://doi.org/10.1098/rstb.2020.0476

Zaharias, P., Smirnov, V., & Warnow, T. (Accepted/In press). Large-Scale Multiple Sequence Alignment and the Maximum Weight Trace Alignment Merging Problem. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 1-13. https://doi.org/10.1109/TCBB.2022.3191848

Xiong, Y., Huang, Q., Canady, T. D., Barya, P., Liu, S., Arogundade, O. H., Race, C. M., Wang, X., Zhou, L., Wang, X., Kohli, M., Smith, A. M., & Cunningham, B. T. (2022). Photonic Crystal Enhanced Emission and Blinking Suppression for Single Quantum Dot Digital Resolution Biosensing of Cancer-associated miRNA Biomarkers. In CLEO: Science and Innovations, S and I 2022 [JTh6A.2] (Optics InfoBase Conference Papers). Optica Publishing Group (formerly OSA).

Xiong, Y., Huang, Q., Canady, T. D., Barya, P., Liu, S., Arogundade, O. H., Race, C. M., Wang, X., Zhou, L., Wang, X., Kohli, M., Smith, A. M., & Cunningham, B. T. (2022). Photonic Crystal Enhanced Emission and Blinking Suppression for Single Quantum Dot Digital Resolution Biosensing of Cancer-associated miRNA Biomarkers. In 2022 Conference on Lasers and Electro-Optics, CLEO 2022 - Proceedings [JTh6A.2] (2022 Conference on Lasers and Electro-Optics, CLEO 2022 - Proceedings). Institute of Electrical and Electronics Engineers Inc..

Xiong, Y., Huang, Q., Canady, T. D., Barya, P., Liu, S., Arogundade, O. H., Race, C. M., Che, C., Wang, X., Zhou, L., Igarashi, A., Wang, X., Kohli, M., Smith, A. M., & Cunningham, B. T. (2022). Photonic Crystal Enhanced Quantum Dot Biosensor for Cancer-associated miRNA Detection. In 2022 IEEE Sensors, SENSORS 2022 - Conference Proceedings (Proceedings of IEEE Sensors; Vol. 2022-October). Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/SENSORS52175.2022.9967032

Berenbaum, M. R. (2022). Sew-Sew Jokes. American Entomologist, 68(2), 12-15. https://doi.org/10.1093/ae/tmac025

Montag, W., Liao, L. H., & Berenbaum, M. R. (Accepted/In press). Sexually dimorphic responses to monofloral honeys in the small hive beetle, Aethina tumida Murray (Coleoptera: Nitidulidae). Journal of Apicultural Research. https://doi.org/10.1080/00218839.2022.2147712

Dariotis, J. K., & Chen, F. R. (2022). Stress Coping Strategies as Mediators: Toward a Better Understanding of Sexual, Substance, and Delinquent Behavior-Related Risk-Taking among Transition-Aged Youth. Deviant Behavior, 43(4), 397-414. https://doi.org/10.1080/01639625.2020.1796210

Han, Z., Vaidya, R. M., Arogundade, O. H., Ma, L., Zahid, M. U., Sarkar, S., Kuo, C. W., Selvin, P. R., & Smith, A. M. (Accepted/In press). Structural Design of Multidentate Copolymers as Compact Quantum Dot Coatings for Live-Cell Single-Particle Imaging. Chemistry of Materials. https://doi.org/10.1021/acs.chemmater.2c00498

Berenbaum, M. R. (2022). Terms of Art and Terms of Arthropods. American Entomologist, 68(3), 12-15. https://doi.org/10.1093/ae/tmac051

Zhang, C., & Whitaker, R. J. (2022). Transposon Insertion Mutagenesis in Hyperthermophilic Crenarchaeon Sulfolobus islandicus. In Methods in Molecular Biology (pp. 163-176). (Methods in Molecular Biology; Vol. 2522). Humana Press Inc.. https://doi.org/10.1007/978-1-0716-2445-6_10

Infection Genomics for One Health

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