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Ren, H., Dommaraju, S. R., Huang, C., Cui, H., Pan, Y., Nesic, M., Zhu, L., Sarlah, D., Mitchell, D. A., & Zhao, H. (2023). Genome mining unveils a class of ribosomal peptides with two amino termini. Nature communications, 14(1), Article 1624. https://doi.org/10.1038/s41467-023-37287-1
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Zhang, M., Ehmann, M. E., Matukumalli, S., Boob, A. G., Gilbert, D. M., & Zhao, H. (2023). SHIELD: a platform for high-throughput screening of barrier-type DNA elements in human cells. Nature communications, 14(1), Article 5616. https://doi.org/10.1038/s41467-023-41468-3
Zhang, M., Zhu, Z., Xun, G., & Zhao, H. (2023). To cut or not to cut: Next-generation genome editors for precision genome engineering. Current Opinion in Biomedical Engineering, 28, Article 100489. https://doi.org/10.1016/j.cobme.2023.100489
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Gapinske, L., Clark, L., Caro-Rivera, L. M., & Bashir, R. (2023). Cryopreservation Alters Tissue Structure and Improves Differentiation of Engineered Skeletal Muscle. Tissue Engineering - Part A, 29(21-22), 557-568. https://doi.org/10.1089/ten.tea.2023.0075
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Nguyen, V., Xue, P., Li, Y., Zhao, H., & Lu, T. (2023). Controlling circuitry underlies the growth optimization of Saccharomyces cerevisiae. Metabolic Engineering, 80, 173-183. https://doi.org/10.1016/j.ymben.2023.09.013
Zhang, M., Singh, N., Ehmann, M. E., Zheng, L., & Zhao, H. (2023). Incorporation of noncanonical base Z yields modified mRNA with minimal immunogenicity and improved translational capacity in mammalian cells. iScience, 26(10), Article 107739. https://doi.org/10.1016/j.isci.2023.107739
Asserghine, A., Baby, A., Putnam, S. T., Qian, P., Gao, E., Zhao, H., & Rodríguez-López, J. (2023). In situ detection of reactive oxygen species spontaneously generated on lead acid battery anodes: a pathway for degradation and self-discharge at open circuit. Chemical Science, 14(43), 12292-12298. https://doi.org/10.1039/D3SC04736A
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Martínez–Sánchez, C., Bassegoda, O., Deng, H., Almodóvar, X., Ibarzabal, A., de Hollanda, A., Martínez García de la Torre, RA. A., Blaya, D., Ariño, S., Jiménez-Esquivel, N., Aguilar-Bravo, B., Vallverdú, J., Montironi, C., Osorio-Conles, O., Fundora, Y., Sánchez Moreno, F. J., Gómez-Valadés, A. G., Aguilar-Corominas, L., Soria, A., ... Coll, M. (2023). Therapeutic targeting of adipose tissue macrophages ameliorates liver fibrosis in non-alcoholic fatty liver disease. JHEP Reports, 5(10), Article 100830. https://doi.org/10.1016/j.jhepr.2023.100830
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Rodriguez, A., Gandavadi, D., Mathivanan, J., Song, T., Madhanagopal, B. R., Talbot, H., Sheng, J., Wang, X., & Chandrasekaran, A. R. (2023). Self-Assembly of DNA Nanostructures in Different Cations. Small, 19(39), Article 2300040. https://doi.org/10.1002/smll.202300040
Chauhan, N., Xiong, Y., Ren, S., Dwivedy, A., Magazine, N., Zhou, L., Jin, X., Zhang, T., Cunningham, B. T., Yao, S., Huang, W., & Wang, X. (2023). Net-Shaped DNA Nanostructures Designed for Rapid/Sensitive Detection and Potential Inhibition of the SARS-CoV-2 Virus. Journal of the American Chemical Society, 145(37), 20214-20228. https://doi.org/10.1021/jacs.2c04835
Yuan, Y., Shi, C., & Zhao, H. (2023). Machine Learning-Enabled Genome Mining and Bioactivity Prediction of Natural Products. ACS synthetic biology, 12(9), 2650-2662. https://doi.org/10.1021/acssynbio.3c00234
Gapinske, M., Winter, J., Swami, D., Gapinske, L., Woods, W. S., Shirguppe, S., Miskalis, A., Busza, A., Joulani, D., Kao, C. J., Kostan, K., Bigot, A., Bashir, R., & Perez-Pinera, P. (2023). Targeting Duchenne muscular dystrophy by skipping DMD exon 45 with base editors. Molecular Therapy - Nucleic Acids, 33, 572-586. https://doi.org/10.1016/j.omtn.2023.07.029
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Sarker, K., Zhu, R., Holscher, H. D., & Zhai, C. X. (2023). Augmenting nutritional metabolomics with a genome-scale metabolic model for assessment of diet intake. In ACM-BCB 2023 - 14th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics Article 4 (ACM-BCB 2023 - 14th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics). Association for Computing Machinery. https://doi.org/10.1145/3584371.3612958
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Yu, T., Boob, A. G., Singh, N., Su, Y., & Zhao, H. (2023). In vitro continuous protein evolution empowered by machine learning and automation. Cell Systems, 14(8), 633-644. https://doi.org/10.1016/j.cels.2023.04.006
Jeong, Y., Vyas, K., & Irudayaraj, J. (2023). Toxicity of per- and polyfluoroalkyl substances to microorganisms in confined hydrogel structures. Journal of Hazardous Materials, 456, Article 131672. https://doi.org/10.1016/j.jhazmat.2023.131672
Pattabiraman, S., Gabrys, R., & Milenkovic, O. (2023). Coding for Polymer-Based Data Storage. IEEE Transactions on Information Theory, 69(8), 4812-4836. https://doi.org/10.1109/TIT.2023.3267620
Zhang, Z., Feng, J., Yang, C., Cui, H., Harrison, W., Zhong, D., Wang, B., & Zhao, H. (2023). Photoenzymatic enantioselective intermolecular radical hydroamination. Nature Catalysis, 6(8), 687-694. https://doi.org/10.1038/s41929-023-00994-5
You, J. S., Kim, Y., Lee, S., Bashir, R., & Chen, J. (2023). RhoA/ROCK signalling activated by ARHGEF3 promotes muscle weakness via autophagy in dystrophic mdx mice. Journal of Cachexia, Sarcopenia and Muscle, 14(4), 1880-1893. https://doi.org/10.1002/jcsm.13278
Ren, W., Messerschmidt, V., Tsipursky, M., & Irudayaraj, J. (2023). Oxygen Nanobubbles-Embedded Hydrogel as Wound Dressing to Accelerate Healing. ACS Applied Nano Materials, 6(14), 13116-13126. https://doi.org/10.1021/acsanm.3c01812
Han, X., Ju, L. S., & Irudayaraj, J. (2023). Oxygenated Wound Dressings for Hypoxia Mitigation and Enhanced Wound Healing. Molecular pharmaceutics, 20(7), 3338-3355. https://doi.org/10.1021/acs.molpharmaceut.3c00352
Fatma, Z., Tan, S. I., Boob, A. G., & Zhao, H. (2023). A landing pad system for multicopy gene integration in Issatchenkia orientalis. Metabolic Engineering, 78, 200-208. https://doi.org/10.1016/j.ymben.2023.06.010
Peh, G., Gunawan, G. A., Tay, T., Tiong, E., Tan, L. L., Jiang, S., Goh, Y. L., Ye, S., Wong, J., Brown, C. J., Zhao, H., Ang, E. L., Wong, F. T., & Lim, Y. H. (2023). Further Characterization of Fungal Halogenase RadH and Its Homologs. Biomolecules, 13(7), Article 1081. https://doi.org/10.3390/biom13071081
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Jiang, G., Huang, C., Harrison, W., Li, H., Zhou, M., & Zhao, H. (2023). Ene Reductase Enabled Intramolecular β-C−H Functionalization of Substituted Cyclohexanones for Efficient Synthesis of Bridged Bicyclic Nitrogen Scaffolds. Angewandte Chemie - International Edition, 62(22), Article e202302125. https://doi.org/10.1002/anie.202302125
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Liu, W., Zhang, X., Wen, Y., Anastasio, M. A., & Irudayaraj, J. (2023). A machine learning approach to elucidating PFOS-induced alterations of repressive epigenetic marks in kidney cancer cells with single-cell imaging. Environmental Advances, 11, Article 100344. https://doi.org/10.1016/j.envadv.2023.100344
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Yu, T., Cui, H., Li, J. C., Luo, Y., Jiang, G., & Zhao, H. (2023). Enzyme function prediction using contrastive learning. Science, 379(6639), 1358-1363. https://doi.org/10.1126/science.adf2465
Rashid, F., Liu, W., Wang, Q., Ji, B., Irudayaraj, J., & Wang, N. (2023). Mechanomemory in protein diffusivity of chromatin and nucleoplasm after force cessation. Proceedings of the National Academy of Sciences, 120(13), Article e2221432120. https://doi.org/10.1073/pnas.2221432120
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Jeong, Y., & Irudayaraj, J. (2023). Hierarchical encapsulation of bacteria in functional hydrogel beads for inter- and intra- species communication. Acta Biomaterialia, 158, 203-215. https://doi.org/10.1016/j.actbio.2023.01.003
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Rashid, F., Dubinkina, V., Ahmad, S., Maslov, S., & Irudayaraj, J. M. K. (2023). Gut Microbiome-Host Metabolome Homeostasis upon Exposure to PFOS and GenX in Male Mice. Toxics, 11(3), Article 281. https://doi.org/10.3390/toxics11030281
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Kwon, J. Y., Moskwa, N., Kang, W., Fan, T. M., & Lee, C. (2023). Canine as a Comparative and Translational Model for Human Mammary Tumor. Journal of Breast Cancer, 26(1), 1-13. https://doi.org/10.4048/jbc.2023.26.e4
Messerschmidt, V., Ren, W., Tsipursky, M., & Irudayaraj, J. (2023). Characterization of Oxygen Nanobubbles and In Vitro Evaluation of Retinal Cells in Hypoxia. Translational Vision Science and Technology, 12(2), Article 16. https://doi.org/10.1167/tvst.12.2.16
Tu, Z., Irudayaraj, J., & Lee, Y. (2023). Characterizing Spray-Dried Powders through NIR Spectroscopy: Effect of Two Preparation Strategies for Calibration Samples and Comparison of Two Types of NIR Spectrometers. Foods, 12(3), Article 467. https://doi.org/10.3390/foods12030467
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