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Murphy, S. E., & Sweedler, J. V. (2022). Metabolomics-based mass spectrometry methods to analyze the chemical content of 3D organoid models. Analyst, 147(13), 2918-2929. https://doi.org/10.1039/d2an00599a

Gu, W., Zheng, Y., Pogorelov, T., Nair, S. K., & Schmidt, E. W. (2022). Control of Nucleophile Chemoselectivity in Cyanobactin YcaO Heterocyclases PatD and TruD. ACS chemical biology, 17(5), 1215–1225. https://doi.org/10.1021/acschembio.2c00147

Boudreau, M. W., & Hergenrother, P. J. (2022). Evolution of 3-(4-hydroxyphenyl)indoline-2-one as a scaffold for potent and selective anticancer activity. RSC Medicinal Chemistry, 13(6), 711-725. https://doi.org/10.1039/d2md00110a

Spietz, R. L., Payne, D., Kulkarni, G., Metcalf, W. W., Roden, E. E., & Boyd, E. S. (2022). Investigating Abiotic and Biotic Mechanisms of Pyrite Reduction. Frontiers in Microbiology, 13, [878387]. https://doi.org/10.3389/fmicb.2022.878387

Dennis, D. G., Anand, S. D., Lopez, A. J., Petrovčič, J., Das, A., & Sarlah, D. (2022). Synthesis of the Cannabimovone and Cannabifuran Class of Minor Phytocannabinoids and Their Anti-inflammatory Activity. Journal of Organic Chemistry, 87(9), 6075-6086. https://doi.org/10.1021/acs.joc.2c00336

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Zhao, B., Wang, W., Li, N., Garcia-Lezana, T., Che, C., Wang, X., Losic, B., Villanueva, A., & Cunningham, B. T. (2022). Digital-resolution and highly sensitive detection of multiple exosomal small RNAs by DNA toehold probe-based photonic resonator absorption microscopy. Talanta, 241, [123256]. https://doi.org/10.1016/j.talanta.2022.123256

Diefenbacher, M., Tan, T. J. C., Bauer, D. L. V., Stadtmueller, B. M., Wu, N. C., & Brooke, C. B. (2022). Interactions between Influenza A Virus Nucleoprotein and Gene Segment Untranslated Regions Facilitate Selective Modulation of Viral Gene Expression. Journal of virology, 96(10). https://doi.org/10.1128/jvi.00205-22

Frye, K. A., Sendra, K. M., Waldron, K. J., & Kehl-Fie, T. E. (2022). Old dogs, new tricks: New insights into the iron/manganese superoxide dismutase family. Journal of Inorganic Biochemistry, 230, [111748]. https://doi.org/10.1016/j.jinorgbio.2022.111748

Zou, Q., Dong, H., Zhu, L., & Cronan, J. E. (2022). The Enterococcus faecalis FabT Transcription Factor Regulates Fatty Acid Biosynthesis in Response to Exogeneous Fatty Acids. Frontiers in Microbiology, 13, [877582]. https://doi.org/10.3389/fmicb.2022.877582

Harrison, W., Huang, X., & Zhao, H. (2022). Photobiocatalysis for Abiological Transformations. Accounts of chemical research, 55(8), 1087-1096. https://doi.org/10.1021/acs.accounts.1c00719

David, B. M., Wyllie, R. M., Harouaka, R., & Jensen, P. A. (2022). A reinforcement learning framework for pooled oligonucleotide design. Bioinformatics, 38(8), 2219-2225. https://doi.org/10.1093/bioinformatics/btac073

McLaughlin, M. I., Yu, Y., & Van Der Donk, W. A. (2022). Substrate Recognition by the Peptidyl-(S)-2-mercaptoglycine Synthase TglHI during 3-Thiaglutamate Biosynthesis. ACS chemical biology, 17(4), 930-940. https://doi.org/10.1021/acschembio.2c00087

Sarksian, R., Hegemann, J. D., Simon, M. A., Acedo, J. Z., & Van Der Donk, W. A. (2022). Unexpected Methyllanthionine Stereochemistry in the Morphogenetic Lanthipeptide SapT. Journal of the American Chemical Society, 144(14), 6373-6382. https://doi.org/10.1021/jacs.2c00517

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Xie, Y. R., Castro, D. C., Rubakhin, S. S., Sweedler, J. V., & Lam, F. (2022). Enhancing the Throughput of FT Mass Spectrometry Imaging Using Joint Compressed Sensing and Subspace Modeling. Analytical Chemistry, 94(13), 5335-5343. https://doi.org/10.1021/acs.analchem.1c05279

Song, K., Minami, J. K., Huang, A., Dehkordi, S. R., Lomeli, S. H., Luebeck, J., Goodman, M. H., Moriceau, G., Krijgsman, O., Dharanipragada, P., Ridgley, T., Crosson, W. P., Salazar, J., Pazol, E., Karin, G., Jayaraman, R., Balanis, N. G., Alhani, S., Sheu, K., ... Graeber, T. G. (2022). Plasticity of Extrachromosomal and Intrachromosomal BRAF Amplifications in Overcoming Targeted Therapy Dosage Challenges. Cancer Discovery, 12(4), 1046-1069. https://doi.org/10.1158/2159-8290.CD-20-0936

Clark, K. D., Rubakhin, S. S., & Sweedler, J. V. (2022). Characterizing RNA Modifications in Single Neurons using Mass Spectrometry. Journal of Visualized Experiments, 2022(182), [e63940]. https://doi.org/10.3791/63940

Cogan, D. P., Bhushan, A., Reyes, R., Zhu, L., Piel, J., & Nair, S. K. (2022). Structure and mechanism for iterative amide N-methylation in the biosynthesis of channel-forming peptide cytotoxins. Proceedings of the National Academy of Sciences of the United States of America, 119(13), [e2116578119]. https://doi.org/10.1073/pnas.2116578119

Beker, W., Roszak, R., Wolos, A., Angello, N. H., Rathore, V., Burke, M. D., & Grzybowski, B. A. (2022). Machine Learning May Sometimes Simply Capture Literature Popularity Trends: A Case Study of Heterocyclic Suzuki-Miyaura Coupling. Journal of the American Chemical Society, 144(11), 4819-4827. https://doi.org/10.1021/jacs.1c12005

Lundahl, M. N., Sarksian, R., Yang, H., Jodts, R. J., Pagnier, A., Smith, D. F., Mosquera, M. A., Van Der Donk, W. A., Hoffman, B. M., Broderick, W. E., & Broderick, J. B. (2022). Mechanism of Radical S-Adenosyl- l -methionine Adenosylation: Radical Intermediates and the Catalytic Competence of the 5′-Deoxyadenosyl Radical. Journal of the American Chemical Society, 144(11), 5087-5098. https://doi.org/10.1021/jacs.1c13706

Wu, YF., Toba, E. A. D. L., Dvoretskiy, S., Jung, R., Kim, N., Daniels, L., Romanova, E. V., Drnevich, J., Sweedler, J. V., & Boppart, M. D. (Accepted/In press). Development of a cell‐free strategy to recover aged skeletal muscle after disuse. The Journal of Physiology. https://doi.org/10.1113/JP282867

Hergenrother, P. J., & Riley, A. (2022). Topoisomerase inhibitors with antibacterial and anticancer activity. (U.S. Patent No. 11274106).

Boudreau, M. W., Mulligan, M. P., Shapiro, D. J., Fan, T. M., & Hergenrother, P. J. (2022). Activators of the Anticipatory Unfolded Protein Response with Enhanced Selectivity for Estrogen Receptor Positive Breast Cancer. Journal of Medicinal Chemistry, 65(5), 3894-3912. https://doi.org/10.1021/acs.jmedchem.1c01730

Tran, V. G., & Zhao, H. (2022). Engineering robust microorganisms for organic acid production. Journal of Industrial Microbiology and Biotechnology, 49(2), [kuab067]. https://doi.org/10.1093/jimb/kuab067

Zhao, H., & Enghiad, B. (2022). Programmable DNA-guided artificial restriction enzymes. (U.S. Patent No. 11261483).

Ding, W., Meng, Q., Dong, G., Qi, N., Zhao, H., & Shi, S. (2022). Metabolic engineering of threonine catabolism enables Saccharomyces cerevisiae to produce propionate under aerobic conditions. Biotechnology Journal, 17(3), [2100579]. https://doi.org/10.1002/biot.202100579

Che, C., Xue, R., Li, N., Gupta, P., Wang, X., Zhao, B., Singamaneni, S., Nie, S., & Cunningham, B. T. (2022). Accelerated Digital Biodetection Using Magneto-plasmonic Nanoparticle-Coupled Photonic Resonator Absorption Microscopy. ACS Nano, 16(2), 2345–2354. https://doi.org/10.1021/acsnano.1c08569

Vasan, A. K., Haloi, N., Ulrich, R. J., Metcalf, M. E., Wen, P. C., Metcalf, W. W., Hergenrother, P. J., Shukla, D., & Tajkhorshid, E. (2022). Role of internal loop dynamics in antibiotic permeability of outer membrane porins. Proceedings of the National Academy of Sciences of the United States of America, 119(8), [e2117009119]. https://doi.org/10.1073/pnas.2117009119

Liang, J., Zhang, H., Tan, Y. L., Zhao, H., & Ang, E. L. (2022). Directed Evolution of Replication-Competent Double-Stranded DNA Bacteriophage toward New Host Specificity. ACS synthetic biology, 11(2), 634-643. https://doi.org/10.1021/acssynbio.1c00319

Svec, R. L., Mckee, S. A., Berry, M. R., Kelly, A. M., Fan, T. M., & Hergenrother, P. J. (2022). Novel Imidazotetrazine Evades Known Resistance Mechanisms and Is Effective against Temozolomide-Resistant Brain Cancer in Cell Culture. ACS chemical biology, 17(2), 299–313. https://doi.org/10.1021/acschembio.2c00022

Oberg, N., Precord, T. W., Mitchell, D. A., & Gerlt, J. A. (2022). RadicalSAM.org: A Resource to Interpret Sequence-Function Space and Discover New Radical SAM Enzyme Chemistry. ACS Bio and Med Chem Au, 2(1), 22-35. https://doi.org/10.1021/acsbiomedchemau.1c00048

Li, N., Wang, X., Tibbs, J., Che, C., Peinetti, A. S., Zhao, B., Liu, L., Barya, P., Cooper, L., Rong, L., Wang, X., Lu, Y., & Cunningham, B. T. (2022). Label-Free Digital Detection of Intact Virions by Enhanced Scattering Microscopy. Journal of the American Chemical Society, 144(4), 1498-1502. https://doi.org/10.1021/jacs.1c09579

Xiong, Y., Li, N., Che, C., Wang, W., Barya, P., Liu, W., Liu, L., Wang, X., Wu, S., Hu, H., & Cunningham, B. T. (2022). Microscopies Enabled by Photonic Metamaterials. Sensors, 22(3), [1086]. https://doi.org/10.3390/s22031086

Dainton, A. N., He, F., Bingham, T. W., Sarlah, D., Detweiler, K. B., Mangian, H. J., & De Godoy, M. R. C. (2022). Nutritional and physico-chemical implications of avocado meal as a novel dietary fiber source in an extruded canine diet. Journal of animal science, 100(2), [skac026]. https://doi.org/10.1093/jas/skac026

Li, N., Zhao, B., Stavins, R., Peinetti, A. S., Chauhan, N., Bashir, R., Cunningham, B. T., King, W. P., Lu, Y., Wang, X., & Valera, E. (2022). Overcoming the limitations of COVID-19 diagnostics with nanostructures, nucleic acid engineering, and additive manufacturing. Current Opinion in Solid State and Materials Science, 26(1), [100966]. https://doi.org/10.1016/j.cossms.2021.100966

Zhang, Y., Kim, S., Shi, W., Zhao, Y., Park, I., Brenden, C., Iyer, H., Jha, P., Bashir, R., Sweedler, J. V., & Vlasov, Y. (2022). Droplet-assisted electrospray phase separation using an integrated silicon microfluidic platform. Lab on a chip, 22(1), 40-46. https://doi.org/10.1039/d1lc00758k

Daniels, P. N., Lee, H., Splain, R. A., Ting, C. P., Zhu, L., Zhao, X., Moore, B. S., & van der Donk, W. A. (2022). A biosynthetic pathway to aromatic amines that uses glycyl-tRNA as nitrogen donor. Nature Chemistry, 14(1), 71-77. https://doi.org/10.1038/s41557-021-00802-2

Bingham, T. W., Hernandez, L. W., & Sarlah, D. (2022). Amaryllidaceae isocarbostyril alkaloids. In M. Harmata (Ed.), Strategies and Tactics in Organic Synthesis (Vol. 15, pp. 1-52). Academic Press Inc.. https://doi.org/10.1016/B978-0-12-822212-6.00004-7

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De Crécy-Lagard, V., Amorin De Hegedus, R., Arighi, C., Babor, J., Bateman, A., Blaby, I., Blaby-Haas, C., Bridge, A. J., Burley, S. K., Cleveland, S., Colwell, L. J., Conesa, A., Dallago, C., Danchin, A., De Waard, A., Deutschbauer, A., Dias, R., Ding, Y., Fang, G., ... Xu, J. (2022). A roadmap for the functional annotation of protein families: A community perspective. Database, 2022, [baac062]. https://doi.org/10.1093/database/baac062

De La Toba, E. A., Anapindi, K. D. B., & Sweedler, J. V. (Accepted/In press). Assessment and Comparison of Database Search Engines for Peptidomic Applications. Journal of Proteome Research. https://doi.org/10.1021/acs.jproteome.2c00307

Lu, T., Qi, F., Ner, J., Feng, T., Cunningham, B., & Peng, L. (2022). GeauxTrace: A Scalable Privacy-Protecting Contact Tracing App Design Using Blockchain. In Proceedings - 2022 IEEE/ACM 9th International Conference on Big Data Computing, Applications and Technologies, BDCAT 2022 (pp. 100-109). (Proceedings - 2022 IEEE/ACM 9th International Conference on Big Data Computing, Applications and Technologies, BDCAT 2022). Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/BDCAT56447.2022.00020

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Rubakhin, S. S., Romanova, E. V., & Sweedler, J. V. (2022). High-Throughput Image-Guided Microprobe Mass Spectrometric Analysis of Single Cells. In Neuromethods (pp. 115-163). (Neuromethods; Vol. 184). Humana Press Inc.. https://doi.org/10.1007/978-1-0716-2525-5_6

Xiong, X., Tasan, I., Yang, C., Zhang, M., Hernandez Gonzalez, G. A., Liu, S., Chaturvedi, P., Belmont, A. S., & Zhao, H. (Accepted/In press). Imaging Method Using CRISPR/dCas9 and Engineered gRNA Scaffolds Can Perturb Replication Timing at the HSPA1 Locus. ACS synthetic biology. https://doi.org/10.1021/acssynbio.2c00433

Lee, H., & Van Der Donk, W. A. (2022). Macrocyclization and Backbone Modification in RiPP Biosynthesis. Annual review of biochemistry, 91, 269-294. https://doi.org/10.1146/annurev-biochem-032620-104956

Anapindi, K. D. B., Romanova, E. V., Checco, J. W., & Sweedler, J. V. (2022). Mass Spectrometry Approaches Empowering Neuropeptide Discovery and Therapeutics. Pharmacological Reviews, 74(3), 662-679. https://doi.org/10.1124/pharmrev.121.000423

De La Toba, E. A., Bell, S. E., Romanova, E. V., & Sweedler, J. V. (2022). Mass Spectrometry Measurements of Neuropeptides: From Identification to Quantitation. Annual Review of Analytical Chemistry, 15, 83-106. https://doi.org/10.1146/annurev-anchem-061020-022048

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Chauhan, N., Wang, W., Lee, H. K., Xiong, Y., Zhang, T., Magazine, N., Peng, L., Zhou, L., Huang, W., Wang, X., & Cunningham, B. T. (2022). V-Pods: Rapid, Sensitive Detection of Intact SARS-CoV-2 using DNA Nets and a Smartphone-Linked Fluorimeter. In B. M. Cullum, D. Kiehl, & E. S. McLamore (Eds.), Smart Biomedical and Physiological Sensor Technology XIX [1212306] (Proceedings of SPIE - The International Society for Optical Engineering; Vol. 12123). SPIE. https://doi.org/10.1117/12.2617550